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  1. have you try to select the small polygon based on their centroid on the big polygon?, is it really select the correct small polygon or there is a missing small polygon (not selected)?
  2. hi EGYXee, have you try to use Spatial Join (Analysis Tools) from ArcToolbox? ArcToolbox --> Analysis Tools --> Overlay --> Spatial Join, from there you can choose Join Operation to : JOIN_ONE_TO_ONE (if only one small polygon in the big one), don't worry, it doesn't need to have common field between target layer and source layer and Match Option set to HAVE_THEIR_CENTER_IN

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